Case creation script
export CESMDATAROOT=$scratch/CESM_INPUT readonly CESM_PREFIX="2022_05_05_FV3" readonly COMPSET="FADIAB" readonly GRID_NAME="C96_C96_mg17" readonly CESM_GROUP="test_cases" readonly CASE_ID="jw06" readonly NPROCS="36" # ================= readonly CASE_DIR="${HOME}/cesm_cases/${CESM_PREFIX}/${CESM_GROUP}" readonly SRC_DIR="${HOME}/cesm_src/${CESM_PREFIX}" readonly CASE_NAME="${CESM_PREFIX}.${GRID_NAME}.${COMPSET}.${NPROCS}.${CESM_GROUP}.${CASE_ID}" readonly BUILD_ROOT="${scratch}/CESM/${CESM_PREFIX}/${CASE_NAME}" # ================= readonly MY_CESM_ROOT=/scratch/cjablono_root/cjablono1/owhughes/CESM_ROOT readonly DIN_LOC_ROOT=/scratch/cjablono_root/cjablono1/owhughes/CESM_ROOT/input readonly MY_SLURM_ACCOUNT=cjablono0 readonly MY_CESM_CASES=${CASE_DIR} readonly MY_CESM_SRC=${SRC_DIR} readonly MY_CESM_SCRATCH=/scratch/cjablono_root/${MY_SLURM_ACCOUNT}/${USER} export PATH=${SRC_DIR}/cime/scripts/://sw/arcts/centos7/stacks/intel/18.0.5/netcdf-fortran/4.4.5/bin:/sw/arcts/centos7/stacks/intel/18.0.5/netcdf-c/4.6.2/bin:/sw/arcts/centos7/cmake/3.13.2/bin:/sw/arcts/centos7/stacks/intel/18.0.5/hdf5/1.8.21/bin:/sw/arcts/centos7/stacks/intel/18.0.5/openmpi/3.1.4/bin:/sw/arcts/centos7/intel/18.0.5/compilers_and_libraries_2018.5.274/linux/bin/intel64:/sw/med/centos7/ghostscript/9.27/bin:/sw/lsa/centos7/nco/4.7.2/bin:/sw/arcts/centos7/ncl/6.6.2/bin:/sw/lsa/centos7/ncview/2.1.8/bin:/opt/singularity/3.5.2/bin:/opt/TurboVNC/bin:/opt/slurm/bin:/opt/slurm/sbin:/usr/lib64/qt-3.3/bin:/sw/arcts/centos7/usertools/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/opt/ddn/ime/bin:/home/owhughes/.local/bin:/home/owhughes/bin # ================ export_mach_vars() { export MY_CESM_ROOT export DIN_LOC_ROOT export MY_SLURM_ACCOUNT export MY_CESM_CASES export MY_CESM_SRC export MY_CESM_SCRATCH export CESM_GROUP } handle_case_exists() { local abs_case_dir=$1 cat << EOF Case directory ${abs_case_dir} already exists! Cowardly refusing to overwrite it :( EOF exit 1 } create_case(){ is_dir "${CASE_DIR}/${CASE_NAME}" \ && handle_case_exists "${CASE_DIR}/${CASE_NAME}" export_mach_vars yes r | ${SRC_DIR}/cime/scripts/create_newcase --compset "${COMPSET}" --res ${GRID_NAME} --case ${CASE_DIR}/${CASE_NAME} --run-unsupported --pecount ${NPROCS} } create_xml_config_helper() { local config_script="$CASE_DIR/${CASE_NAME}/xml_config_helper.sh" cat << EOF > $config_script # ------------------ readonly DEBUG=FALSE # ------------------ # set this to true if you want an archive directory readonly DOUT_S=FALSE #------------------- # valid options for this value are: # nsteps, nseconds, nminutes, nhours, ndays, nmonths, nyears readonly STOP_OPTION=ndays # ------------------ readonly STOP_N=20 readonly ATM_NCPL=96 # ------------------ # Set the frequency at which files for restarting the model (e.g. in the # case of a blowup) are written. If TRUE, make sure to set REST_N readonly REST_OPTION=none readonly REST_N=1 # ==================== # CAM build flag (note: this is quite finicky and causes compiler errors if done wrong) readonly CAM_CONFIG_OPTS="--phys adiabatic --analytic_ic" #-------------------- # Maximum runtime: readonly HOURS=11 readonly MINUTES=50 readonly SECONDS=00 # -------------------- main() { ./xmlchange DEBUG=\${DEBUG},DOUT_S=\${DOUT_S},STOP_OPTION=\${STOP_OPTION},STOP_N=\${STOP_N},REST_OPTION=\${REST_OPTION},REST_N=\${REST_N},ATM_NCPL=\${ATM_NCPL} \ && ./xmlchange --file env_build.xml --id CAM_CONFIG_OPTS --val "\${CAM_CONFIG_OPTS}" \ && ./xmlquery CAM_CONFIG_OPTS \ && ./xmlchange JOB_WALLCLOCK_TIME=\${HOURS}:\${MINUTES}:\${SECONDS} \ && ./case.setup } main EOF } create_user_nl_cam() { local config_script="$CASE_DIR/${CASE_NAME}/user_nl_cam" cat << EOF > $config_script avgflag_pertape = 'I' fincl1 = 'PS:I','T:I','U:I','V:I','OMEGA:I','T850:I','U850:I','V850:I','OMEGA850:I','PHIS:I' MFILT = 90 NHTFRQ = -24 NDENS = 2 EOF } create_bash_source() { local config_script="$CASE_DIR/${CASE_NAME}/bash.source" cat << EOF > $config_script module load intel/18.0.5 module load openmpi/3.1.4 module load netcdf-c/4.6.2 module load netcdf-fortran/4.4.5 readonly MY_CESM_ROOT=${MY_CESM_ROOT} export MY_CESM_ROOT readonly DIN_LOC_ROOT=${MY_CESM_ROOT} export DIN_LOC_ROOT readonly MY_SLURM_ACCOUNT=${MY_SLURM_ACCOUNT} export MY_SLURM_ACCOUNT readonly MY_CESM_CASES=${MY_CESM_CASES} export MY_CESM_CASES readonly MY_CESM_SRC=${MY_CESM_SRC} export MY_CESM_SRC readonly MY_CESM_SCRATCH=${MY_CESM_SCRATCH} export MY_CESM_SCRATCH export PATH=${PATH} EOF } create_preview_namelists_helper() { local config_script="$CASE_DIR/${CASE_NAME}/preview_namelists_helper.sh" cat << EOF > $config_script ./preview_namelists > preview_namelists.log 2> preview_namelists.err EOF } create_case_build_helper() { local config_script="$CASE_DIR/${CASE_NAME}/case_build_helper.sh" echo "qcmd -A ${PROJECT} -- ${CASE_DIR}/${CASE_NAME}/case.build" > $config_script } main() { create_case \ && create_xml_config_helper \ && create_user_nl_cam \ && create_preview_namelists_helper \ && create_case_build_helper \ && create_bash_source } # ============================================================================ # begin namelist # ============================================================================ # =========================================================================== # ============================================================================ # begin boilerplate # ============================================================================ readonly PROGNAME=$(basename $0) readonly PROGDIR=$(readlink -m $(dirname $0)) readonly ARGS="$@" is_empty() { local var=$1 [[ -z $var ]] } is_not_empty() { local var=$1 [[ -n $var ]] } is_file() { local file=$1 [[ -f $file ]] } is_link() { local var=$1 [[ `test -L $1` ]] } is_dir() { local dir=$1 [[ -d $dir ]] } # ================================================================= # end boilerplate # ================================================================= main