Code modifications

The total energy (in the continuum) reads as E=K+I+P=12πs(u2+v2+w2)+cp(θvπs)Π+ϕsp+ E = K + I + P = \frac{1}{2} \pder{\pi}{s} \left(u^2 + v^2 + w^2 \right) + c_p (\theta_v \pder{\pi}{s})\Pi + \pder{\phi}{s} p + \frac{}{}

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